Data of Antarctic yeasts transcriptomes (doi:10.34691/FK2/APMVNO)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Entire Codebook

Document Description
Citation
Title:	Data of Antarctic yeasts transcriptomes
Identification Number:	doi:10.34691/FK2/APMVNO
Distributor:	Repositorio de datos de investigación de la Universidad de Chile
Date of Distribution:	2022-01-12
Version:	1
Bibliographic Citation:	Baeza, Marcelo, 2022, "Data of Antarctic yeasts transcriptomes", https://doi.org/10.34691/FK2/APMVNO, Repositorio de datos de investigación de la Universidad de Chile, V1, UNF:6:v3YH2Ls9jHTIUR00mu6M1g== [fileUNF]
Study Description
Citation
Title:	Data of Antarctic yeasts transcriptomes
Identification Number:	doi:10.34691/FK2/APMVNO
Authoring Entity:	Baeza, Marcelo (Universidad de Chile)
Distributor:	Repositorio de datos de investigación de la Universidad de Chile
Access Authority:	Baeza, Marcelo
Depositor:	Baeza, Marcelo
Date of Deposit:	2022-01-11
Holdings Information:	https://doi.org/10.34691/FK2/APMVNO
Study Scope
Keywords:	Earth and Environmental Sciences, Antarctic yeasts
Abstract:	Data of expression of ORFs identified in different cellular pathways, including the percentages of amino acids according to their flexibility.
Methodology and Processing
Sources Statement
Data Access
Other Study Description Materials
File Description--f26
File: CUB1.tab
	Number of cases: 926477 No. of variables per record: 4 Type of File: text/tab-separated-values
Notes:	UNF:6:rb497r5NTyrjmV/H2/3stg==
File Description--f22
File: CUB2.tab
	Number of cases: 766646 No. of variables per record: 4 Type of File: text/tab-separated-values
Notes:	UNF:6:bJWpy0R7yHKQ8vcxq1iT3A==
File Description--f24
File: CUB3.tab
	Number of cases: 810778 No. of variables per record: 4 Type of File: text/tab-separated-values
Notes:	UNF:6:gVr8U9303PsIr1vMKfpW2Q==
File Description--f27
File: Kegg.tab
	Number of cases: 55244 No. of variables per record: 18 Type of File: text/tab-separated-values
Notes:	UNF:6:8HkzgbgOdT3JGQnbrTNsfw==
File Description--f23
File: Medusa.tab
	Number of cases: 34733 No. of variables per record: 10 Type of File: text/tab-separated-values
Notes:	UNF:6:NwB/ysfi0FtAeZXKPalLOw==
File Description--f25
File: MoleParameters.tab
	Number of cases: 33 No. of variables per record: 3 Type of File: text/tab-separated-values
Notes:	UNF:6:/j4r7hndaxEwWzeC3wjbPA==
Variable Description
List of Variables:	Seq - Seq AmAcid - AmAcid Codon - Codon Fraction - Fraction Seq - Seq AmAcid - AmAcid Codon - Codon Fraction - Fraction Seq - Seq AA - AA Codon - Codon Fraction - Fraction Seq - Seq Sp - Sp OTG - OTG Gr - Gr Path1 - Path1 Path2 - Path2 Path3 - Path3 K0s - K0s ENZ - ENZ RPKM-H - RPKM-H RPKM-L - RPKM-L Differential Expression Log2 Ratio - Differential Expression Log2 Ratio Differential Expression p-value - Differential Expression p-value VF - VF VFMF - VFMF % similarity - % similarity Coverage - Coverage Mwratio - Mwratio Sp - Sp Seq - Seq Path1 - Path1 Path2 - Path2 Path3 - Path3 RPKM-H - RPKM-H RPKM-L - RPKM-L Differential Expression Log2 Ratio - Differential Expression Log2 Ratio Differential Expression p-value - Differential Expression p-value Medusa - Medusa Template - Template probe radius - probe radius interior treshold - interior treshold
Variables
Seq
f26 Location:	Variable Format: character Notes: UNF:6:RgVxaAiVd9RcFIuoR/4w7w==
AmAcid
f26 Location:	Variable Format: character Notes: UNF:6:ww2WBagUp9tzmpZSTtY9ng==
Codon
f26 Location:	Variable Format: character Notes: UNF:6:yrsjrl8VYSD7UqrlgwlNUA==
Fraction
f26 Location:	Summary Statistics: Mean 0.3003196949303661; Valid 926477.0; Max. 1.0; Min. 0.0; StDev 0.25210520846292156 Variable Format: numeric Notes: UNF:6:WJlIpmdcVYN9Q8DHGDTLIg==
Seq
f22 Location:	Variable Format: character Notes: UNF:6:ECITM2Kzy5i+rfV7jQI+FA==
AmAcid
f22 Location:	Variable Format: character Notes: UNF:6:qHT/W+OFJD5NoSMpYxRzGg==
Codon
f22 Location:	Variable Format: character Notes: UNF:6:r48hN+mQjOVVyNvRCuMHxw==
Fraction
f22 Location:	Summary Statistics: Valid 766646.0; StDev 0.2876973108608941; Max. 1.0; Min. 0.0; Mean 0.29884528191629495; Variable Format: numeric Notes: UNF:6:Rm+1JVoKi5t/pwWDN3fl+g==
Seq
f24 Location:	Variable Format: character Notes: UNF:6:VRbGEBc96K6cHKj4tMdTBQ==
AA
f24 Location:	Variable Format: character Notes: UNF:6:Rd8/5GdWNmNWJmhGKjYHKw==
Codon
f24 Location:	Variable Format: character Notes: UNF:6:SXN3AQpqZWXJxquau1bFew==
Fraction
f24 Location:	Summary Statistics: Max. 1.0; StDev 0.26745061528647357; Mean 0.29948972468419266; Min. 0.0; Valid 810778.0; Variable Format: numeric Notes: UNF:6:nC7MOG+YEG5vM9Akz10vZA==
Seq
f27 Location:	Variable Format: character Notes: UNF:6:89LufoTdefDcPK16k5tt4A==
Sp
f27 Location:	Variable Format: character Notes: UNF:6:pFGjAsNwgwUVz6J2zNjOHA==
OTG
f27 Location:	Summary Statistics: Min. 10.0; Mean 17.529125334877836; Max. 22.0; StDev 3.884177778772883; Valid 55244.0 Variable Format: numeric Notes: UNF:6:rJJV3X6tPKOEpH862ZGZ8Q==
Gr
f27 Location:	Summary Statistics: StDev 0.3363099346020283; Min. 0.7; Max. 1.7; Valid 55244.0; Mean 1.015808051553113; Variable Format: numeric Notes: UNF:6:gMfpWPVPAanbnsdKZ8SsAQ==
Path1
f27 Location:	Variable Format: character Notes: UNF:6:vZSDRiGxu43XYtWbxIHgPg==
Path2
f27 Location:	Variable Format: character Notes: UNF:6:IFudomO2gcbAlPosDFkWAw==
Path3
f27 Location:	Variable Format: character Notes: UNF:6:qGGM8HyvI+/wzjdTY3iA7w==
K0s
f27 Location:	Variable Format: character Notes: UNF:6:gaYD0oD2mI+M798s0BHz9A==
ENZ
f27 Location:	Variable Format: character Notes: UNF:6:DIIcYHJKzE6f4iibFWuFMA==
RPKM-H
f27 Location:	Summary Statistics: Min. 0.0; Mean 187.07172706538242; Max. 44503.82; Valid 55244.0; StDev 885.707208900226; Variable Format: numeric Notes: UNF:6:wGOfPQlHK2XEeagymwPU8A==
RPKM-L
f27 Location:	Summary Statistics: Valid 55244.0; Mean 166.8144336036503; StDev 694.5322696709263; Max. 33414.54; Min. 0.0 Variable Format: numeric Notes: UNF:6:B1NfAVcErM/9ND1fsbmxrg==
Differential Expression Log2 Ratio
f27 Location:	Summary Statistics: Max. 15.0; Min. -15.0; Valid 55244.0; Mean -0.09280084715082199; StDev 2.5495014543388095; Variable Format: numeric Notes: UNF:6:ax8hIrSS9YUSzzLD1cvNXA==
Differential Expression p-value
f27 Location:	Summary Statistics: Mean 0.2775393420150173; Valid 55244.0; Max. 1.0; StDev 0.3637312309910688; Min. 0.0; Variable Format: numeric Notes: UNF:6:fA5y6jSnccFzpUrO7/o06g==
VF
f27 Location:	Summary Statistics: Min. 10.8; Valid 55244.0; Max. 72.8; Mean 34.85914307436102; StDev 4.2154131315292895 Variable Format: numeric Notes: UNF:6:r6QNmmwbwQVJ/UgYxsMvCA==
VFMF
f27 Location:	Summary Statistics: Mean 79.00778908116715; Max. 95.7; Valid 55244.0; Min. 40.9; StDev 4.181091565554336; Variable Format: numeric Notes: UNF:6:jC6IgJ7UFHcvs3vGw4IOmw==
% similarity
f27 Location:	Variable Format: character Notes: UNF:6:nugBYqL1/QrI8+RL2CyVLA==
Coverage
f27 Location:	Variable Format: character Notes: UNF:6:78QXA1cMDTzdosbbgkSeNQ==
Mwratio
f27 Location:	Variable Format: character Notes: UNF:6:xOSojL6H0FS31KTnVDyWQQ==
Sp
f23 Location:	Variable Format: character Notes: UNF:6:8B6I5mElVIS/uEgFgFOs2w==
Seq
f23 Location:	Variable Format: character Notes: UNF:6:wxvJzHOmO4U76Pxa7uBwIw==
Path1
f23 Location:	Variable Format: character Notes: UNF:6:6vU+6/PdbHR+eoOBkAXRPg==
Path2
f23 Location:	Variable Format: character Notes: UNF:6:LvAPN1UufgobsBDtCi4URg==
Path3
f23 Location:	Variable Format: character Notes: UNF:6:ZTi4OF+gEfHLU0CxWeH5pQ==
RPKM-H
f23 Location:	Summary Statistics: Valid 34733.0; StDev 963.7929958637408; Min. 0.0; Mean 215.35055998617128; Max. 44503.8 Variable Format: numeric Notes: UNF:6:ZerLD2kOjtmmt6wErBmg7w==
RPKM-L
f23 Location:	Summary Statistics: Valid 34733.0; Min. 0.0; StDev 782.1838626217793; Max. 33414.5; Mean 205.2320502116154 Variable Format: numeric Notes: UNF:6:GDKUsN82m9CVZfVzXlFKpg==
Differential Expression Log2 Ratio
f23 Location:	Summary Statistics: StDev 104560.05446816717; Valid 34733.0; Mean -6074.938459966219; Min. -1000000.0; Max. 1000000.0 Variable Format: numeric Notes: UNF:6:oUKbltiWqiPaWIYVFcmMBw==
Differential Expression p-value
f23 Location:	Summary Statistics: Min. 0.0; StDev 0.3358757708669724; Mean 0.22733484667812937; Valid 34733.0; Max. 1.0; Variable Format: numeric Notes: UNF:6:II0Ig3OAJnDalnNLY1gLMQ==
Medusa
f23 Location:	Summary Statistics: Max. 93.0; Min. 5.0; StDev 7.6993164946729; Valid 34733.0; Mean 45.79479169665738 Variable Format: numeric Notes: UNF:6:Asp9zLHc9FYeql7VAhOheQ==
Template
f25 Location:	Variable Format: character Notes: UNF:6:RyoLPox4M0Gb+Plz0nESLw==
probe radius
f25 Location:	Summary Statistics: Mean 5.867575757575757; StDev 2.6999780442429415; Min. 4.0; Max. 20.0; Valid 33.0 Variable Format: numeric Notes: UNF:6:hJjD4UH0QrK7u/vcPHoG0w==
interior treshold
f25 Location:	Summary Statistics: Mean 1.5606060606060606; Valid 33.0; Min. 0.97; StDev 0.3827445247317344; Max. 2.4; Variable Format: numeric Notes: UNF:6:lkpohSY+47Io5JsmUBAlyg==