10.34691/UCHILE/AYDRZLSebastian DelgadoSebastianDelgadoFacultad de Ciencias, Universidad de ChileÁlvaro ArmijoÁlvaroArmijoFacultad de Ciencias Químicas y Farmacéuticas Universidad de Chile, Santiago, ChileVerónica BravoVerónicaBravo0000-0001-6743-6851Programa Centro de Investigacion Biomedica y Aplicada, (CIBAP), Escuela de Medicina, Facultad de Ciencias Medicas, Universidad de Santiago de ChileOmar OrellanaOmarOrellana0000-0002-6019-1545ICBM, Facultad de Medicina, Universidad de ChileJuan Carlos SalazarJuan CarlosSalazar0000-0002-2096-2050ICBM, Facultad de Medicina, Universidad de ChileAssaf KatzAssafKatz0000-0001-5481-7399ICBM, Facultad de Medicina, Universidad de ChileImpact of the chemical modification of tRNAs anticodon loop on the variability and evolution of codon usage in proteobacteriaRepositorio de datos de investigación de la Universidad de Chile2024Medicine, Health and Life SciencesCodon usageProteobacteriatRNAtRNA modifiaction enzymeN6-threonylcarbamoyladenosineglutamyl-queuosine2-lysidine2-thiouridineGenome evolutionKatz, AssafAssafKatzICBM, Facultad de Medicina, Universidad de Chile2024-03-042024-05-244483102904648774124453246376686406136686614311441318317172087413616081430689731641338761017761015431430113208189701320802172379713628556072602240104223281371434026202615571594876979009224914143510213242611730135165597271435654490738732870627740948150214887285241408447517188577818607112210194808452244847447912561122033075238552006340106740889application/octet-streamapplication/octet-streamapplication/octet-streamapplication/pdfapplication/vnd.oasis.opendocument.spreadsheetapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/pdfapplication/octet-streamapplication/pdftext/plainapplication/pdftext/plainapplication/vnd.oasis.opendocument.spreadsheettext/tab-separated-valuestext/tab-separated-valuesapplication/vnd.oasis.opendocument.spreadsheetapplication/pdfapplication/vnd.oasis.opendocument.spreadsheetapplication/vnd.oasis.opendocument.spreadsheettext/plaintext/plaintext/tab-separated-valuesapplication/octet-streamapplication/octet-streamapplication/octet-streamapplication/octet-streamtext/plainapplication/octet-streamapplication/octet-streamapplication/octet-streamapplication/octet-streamapplication/octet-streamapplication/octet-streamapplication/octet-stream3.0CC-BY 4.0The data presented here corresponds to the supplementary data of the article entitled "Impact of the chemical modification of tRNAs anticodon loop on the variability and evolution of codon usage in proteobacteria" by Delgado et al. It contains supplementary figures, supplemntary tables and scripts including:
- Relations between codon usage and GC% in proteobacteria
- Phylogenetic trees coupled to bar graphs showing codon usage in proteobacteria
- Relations between codon usage and the number of genes coding for tRNAs in proteobacteria
- Relations between the presence of genes coding for tRNA modification enzymes and codon usage or GC%
- Scripts required to perform the analyzes presented in the article and this supplementary data